PyFuse User Manual

PyFuse (Python Fusion Annotator) is a one-pass gene fusion annotation workflow with two modes:

  • resources: one-time, genome-specific bundle setup and management
  • annotator: end-to-end fusion annotation using managed bundles
  1. Description
  2. Installation
  3. Resource Setup Overview
  4. Resource Install Options and Examples
  5. MANE Usage
  6. Annotator Usage
  7. Output Files
  8. Annotation Columns

Quick start

pyfuse resources install --genome grch38
pyfuse annotator -i /path/to/fusions.tsv -o /path/to/output --input_format star --genome grch38

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